Table 2 Gene targets for fluidigm qPCR neuronal characterization panel
Gene name | Gene category | assay ID |
|---|---|---|
ADARB2 | Inhibitory neuron | Hs00218878_m1 |
ALDH1A2 | Dentate gyrus neuron | Hs00180254_m1 |
AQP4 | Astrocyte | Hs00242342_m1 |
ASCL1 | Immature neuron | Hs00269932_m1 |
B3GAT2 | CA3 neuron | Hs00369834_m1 |
BCL11B | Cortical neuron | Hs01102259_m1 |
C1QL2 | Dentate gyrus neuron | Hs00704398_s1 |
CADPS2 | Dentate gyrus neuron | Hs00604528_m1 |
CALB1 | Interneuron | Hs01077197_m1 |
CALB2 | Interneuron | Hs00242372_m1 |
CAMK2A | Excitatory neuron | Hs00947041_m1 |
CCDC85A | CA3 neuron | Hs00287585_m1 |
CCK | Interneuron | Hs00174937_m1 |
CHAT | Cholinergic neuron | Hs00758143_m1 |
CUX1 | Cortical neuron | Hs00738851_m1 |
DBH | Noradrenergic neuron | Hs01089840_m1 |
DCX | Pan-neuronal | Hs00167057_m1 |
DDC | Dopaminergic neuron | Hs01105048_m1 |
DOCK10 | CA1 neuron | Hs00391515_m1 |
EIF4A2 | Housekeeping | Hs00756996_g1 |
ELAVL2 | CA3 neuron | Hs00270011_m1 |
EN1 | Midbrain neuron | Hs00154977_m1 |
FEZF2 | Cortical neuron | Hs01115572_g1 |
FOXA2 | Midbrain neuron | Hs00232764_m1 |
FOXG1 | Forebrain neuron | Hs01850784_s1 |
FOXP2 | Cortical neuron | Hs00362818_m1 |
GAD1 | Inhibitory neuron | Hs01065893_m1 |
GAPDH | Housekeeping | Hs02786624_g1 |
GRIK4 | CA3 neuron | Hs00205979_m1 |
HOXC5 | Hindbrain neuron | Hs00232747_m1 |
IGSF3 | CA3 neuron | Hs01035583_m1 |
ISL1 | Peripheral neuron | Hs00158126_m1 |
LAMP5 | Cortical neuron | Hs00202136_m1 |
LEF1 | Wnt signaling | Hs01547250_m1 |
LHX2 | Hippocampal neuron | Hs00180351_m1 |
LHX6 | Interneuron | Hs00232660_m1 |
LHX9 | Hippocampal neuron | Hs00294879_m1 |
LMX1A | Dopaminergic neuron | Hs00898455_m1 |
MAP2 | Pan-neuronal | Hs00258900_m1 |
MAPT_2192(3R/4R) | Pan-neuronal | Hs00902192_m1 |
MAPT_2312(4R) | Mature neuron | Hs00902312_m1 |
MNX1 | Motor neuron | Hs00907365_m1 |
MSH6 | Broadly expressed | Hs00943000_m1 |
NANOG | Pluripotency marker | Hs02387400_g1 |
NECAB1 | Cortical neuron | Hs00332733_m1 |
NEUROD1 | Cortical neuron | Hs01922995_s1 |
NGFR | Neural crest | Hs00609976_m1 |
NKX2-1 | Neural progenitor | Hs00968940_m1 |
NKX6-1 | Neural progenitor | Hs00222355_m1 |
NR4 A2 | Dopaminergic neuron | Hs01117527_g1 |
NTNG1 | Excitatory neuron | Hs01552822_m1 |
NTRK1 | Sensory neuron | Hs01021011_m1 |
NTRK2 | Sensory neuron | Hs00178811_m1 |
OLIG2 | Oligodendrocyte/motor neuron | Hs00300164_s1 |
OTX2 | VTA dopaminergic neuron | Hs00222238_m1 |
PAX3 | Peripheral neuron | Hs00249950_m1 |
PAX6 | Dorsal forebrain | Hs01088114_m1 |
PCBD1 | Broadly expressed | Hs01548084_g1 |
PDGFRA | Oligodendrocyte | Hs00998018_m1 |
PDYN | Dentate gyrus neuron | Hs00225770_m1 |
PHOX2A | Dorsal hindbrain progenitor | Hs00605931_mh |
PHOX2B | Dorsal hindbrain progenitor | Hs00243679_m1 |
PITX3 | Dopaminergic neuron | Hs01013935_g1 |
POU3F1 | CA3 neuron | Hs00538614_s1 |
POU3F2 | Cortical neuron | Hs00271595_s1 |
POU5F1 | Pluripotency marker | Hs04260367_gh |
PPP1R1B | Neuron enriched | Hs00259967_m1 |
PRKCD | Dentate gyrus neuron | Hs01099047_m1 |
PROX1 | Dentate gyrus neuron | Hs00896293_m1 |
PVALB | Interneuron | Hs00161045_m1 |
QDPR | Brain enriched | Hs01077088_m1 |
RBFOX3 | Pan-neuronal | Hs01370654_m1 |
RELN | Cortical neuron | Hs01022646_m1 |
RORB | Cortical neuron | Hs00199445_m1 |
RPL13 | Housekeeping | Hs00744303_s1 |
SAMD3 | Dentate gyrus neuron | Hs00381007_m1 |
SATB2 | Cortical neuron | Hs01546836_s1 |
SCGN | CA3 neuron | Hs00199630_m1 |
SLC17A6 | Excitatory neuron | Hs00220439_m1 |
SLC17A7 | Excitatory neuron | Hs00220404_m1 |
SLC18A3 | Cholinergic neuron | Hs00268179_s1 |
SLC1A3 | Astrocyte | Hs00904823_g1 |
SLC32A1 | Inhibitory neuron | Hs00369773_m1 |
SLC6A3 | Dopaminergic neuron | Hs00997374_m1 |
SOX1 | Neural progenitor | Hs01057642_s1 |
SST | Interneuron | Hs00356144_m1 |
SYN1 | Pan-neuronal | Hs00199577_m1 |
SYP | Pan-neuronal | Hs00300531_m1 |
TBR1 | Cortical neuron | Hs00232429_m1 |
TFAP2A | Non-neural ectoderm | Hs01029413_m1 |
TH | Dopaminergic neuron | Hs00165941_m1 |
THEMIS | Cortical neuron | Hs01041269_m1 |
TSPAN18 | CA3 neuron | Hs00901276_m1 |
TSPAN7 | Hippocampal neuron | Hs00190284_m1 |
TUBB3 | Pan-neuronal | Hs00801390_s1 |
VIP | Interneuron | Hs00175021_m1 |